Note commands are different for different formats

ie

robertsmac:sratoolkit.2.1.0-mac64 sr320$ ./illumina-dump -A SRR039705 /Volumes/Bay3/OtherData/Cgigas_illumina_larvaetemp/SRP002286/SRR039705/SRR039705.sra 

produces

PAIRED END

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also going to try

robertsmac:sratoolkit.2.1.0-mac64 sr320$ ./fastq-dump /Volumes/Bay3/OtherData/Cgigas_illumina_larvaetemp/SRP002286/SRR039705/SRR039705.sra 

produces single fastq file

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Note there is also transcriptome data

cd